Compiler problem on el capitan for nanopolish


(Graham Taylor) #1

Trying to install the excellent nanopolish and getting the following error message…

Pouring nanopolish-0.5.0_1.el_capitan.bottle.tar.gz
Warning: homebrew/science/nanopolish dependency hdf5 was built with a different C++ standard
library (libc++ from clang). This may cause problems at runtime.

followed by…

nanopolish

usr/local/opt/hdf5/lib/libhdf5.100.dylib
Referenced from: /usr/local/bin/nanopolish
Reason: image not found
Trace/BPT trap: 5


(Franklin Yu) #2

Don’t know anything about Nanopolish and HDF. Did you install hdf5 yourself? If not, does the directory exist?